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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
36
DNase-seq
36
total RNA-seq
32
ATAC-seq
6
pCHi-C
4
small RNA-seq
3
Hi-C
3
RRBS
1
FAIRE-seq
Assay category
194
DNA binding
69
DNA accessibility
40
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
190
histone
190
histone modification
120
narrow histone mark
70
broad histone mark
control
4
RNA binding protein
4
transcription factor
Date released
100
October, 2019
76
November, 2017
36
June, 2019
32
February, 2023
25
May, 2019
16
July, 2019
13
February, 2020
13
October, 2017
2
March, 2020
2
November, 2018
Available data
236
bed narrowPeak
222
bigWig
219
bam
133
bigBed narrowPeak
99
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
28
tsv
16
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
315
Homo sapiens
Biosample type
296
tissue
19
primary cell
Organ
889
pancreas
650
liver
644
connective tissue
488
epithelium
466
adipose tissue
281
heart
255
brain
212
kidney
207
vasculature
202
blood vessel
159
bone element
130
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
22
embryo
20
lung
19
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
315
AMP
Genome assembly (visualization)
220
GRCh38
192
hg19
Lab
315
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
tar
month_released!
August, 2021
target.investigated_as!
control
BIOSAMPLE
ASSAY
315 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
17
14
1
1
1
islet of Langerhans
2
14
2
4
retina
3
3
15
layer of hippocampus
20
caudate nucleus
13
1
1
+ See 79 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
retinal pigment epithelial cell
2
1
1
brain pericyte
1
1
+ See 1 more…
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