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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
DNase-seq
2
Hi-C
1
pCHi-C
Assay category
17
DNA binding
2
3D chromatin structure
2
DNA accessibility
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
20
October, 2019
2
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
tar
1
tsv
Organism
22
Homo sapiens
Biosample type
21
primary cell
1
tissue
Organ
942
pancreas
786
liver
666
connective tissue
503
epithelium
490
adipose tissue
358
heart
273
kidney
256
brain
228
vasculature
224
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
embryo
25
spleen
21
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tar
month_released!
June, 2019
organ_slims!
embryo
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
DNase-seq
Hi-C
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
tissue
adrenal gland
1
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