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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
3
DNase-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
37
DNA binding
4
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
20
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
1
October, 2017
Available data
44
bam
31
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
24
fastq
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
tar
1
tsv
Organism
46
Homo sapiens
Biosample type
25
tissue
21
primary cell
Organ
833
pancreas
691
liver
674
connective tissue
486
adipose tissue
435
epithelium
382
heart
351
kidney
283
brain
230
vasculature
225
blood vessel
159
bone element
140
artery
122
limb
94
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
30
hg19
28
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tar
month_released!
May, 2022
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
DNase-seq
Hi-C
WGBS
ATAC-seq
pCHi-C
tissue
spleen
20
1
2
1
1
primary cell
endothelial cell of umbilical vein
17
2
2
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