Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
25
ATAC-seq
20
total RNA-seq
2
Hi-C
Assay category
410
DNA binding
25
DNA accessibility
20
Transcription
2
3D chromatin structure
Target of assay
240
transcription factor
96
histone
96
histone modification
71
control
66
recombinant protein
56
broad histone mark
40
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
399
May, 2021
397
November, 2017
354
August, 2017
341
May, 2020
312
August, 2021
266
October, 2019
263
February, 2021
210
June, 2019
200
May, 2022
169
February, 2023
168
July, 2018
94
December, 2017
87
November, 2018
84
July, 2019
80
April, 2019
73
September, 2018
70
May, 2019
60
November, 2019
59
March, 2020
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
22
October, 2017
20
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
444
bam
359
bigWig
345
bed narrowPeak
318
fastq
308
bigBed narrowPeak
78
tagAlign
66
bed broadPeak
60
bigBed broadPeak
20
tsv
tar
2
bedpe bed3+
2
hic
Organism
457
Homo sapiens
Biosample type
328
cell line
121
tissue
5
in vitro differentiated cells
3
primary cell
Organ
312
liver
91
brain
55
pancreas
22
epithelium
vasculature
3
blood vessel
adipose tissue
1
connective tissue
Project
457
AMP
Genome assembly (visualization)
332
GRCh38
330
hg19
Lab
457
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tar
organ_slims!
adipose tissue
vasculature
BIOSAMPLE
ASSAY
457 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
cell line
HepG2
312
EndoC_BH1
13
1
1
1
tissue
islet of Langerhans
19
19
1
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
astrocyte of the cerebellum
3
See all biosamples
Download