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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 129ChIP-seq
  • 103ATAC-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 19DNase-seq
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1RNA microarray
Assay category
  • 201Transcription
  • 129DNA binding
  • 122DNA accessibility
  • 53DNA methylation
  • 83D chromatin structure
Target of assay
  • 93histone
  • 93histone modification
  • 49narrow histone mark
  • 44broad histone mark
  • 30control
  • 9transcription factor
  • 8RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 80May, 2022
  • 61September, 2018
  • 52February, 2023
  • 34October, 2019
  • 33April, 2018
  • 33July, 2018
  • 32February, 2021
  • 29August, 2017
  • 26May, 2021
  • 20June, 2019
  • 19December, 2017
  • 19September, 2020
  • 16November, 2019
  • 13July, 2019
  • 7August, 2020
  • 6August, 2021
  • 6December, 2019
  • 6March, 2020
  • 6November, 2017
  • 6November, 2020
  • 5May, 2019
  • 5September, 2017
  • 3August, 2018
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
Available data
  • 317bam
  • 301bigWig
  • 257fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • tar
Organism
  • 522Homo sapiens
Biosample type
  • 405primary cell
  • 79cell line
  • 24in vitro differentiated cells
  • 15tissue
Organ
  • 946pancreas
  • 788liver
  • 684connective tissue
  • 523epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 235vasculature
  • 229blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 21vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 367AMP
  • 152HPAP
  • 4T1D
Genome assembly (visualization)
  • 310hg19
  • 294GRCh38
Lab
  • 365AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 91inconsistent ontology term
  • 5audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
files.file_type!
  • tar
BIOSAMPLE
ASSAY

523 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
endothelial cell of umbilical vein1722
cell line
EndoC_BH13315191621
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
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