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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128ChIP-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 128DNA binding
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 52transcription factor
  • 47histone
  • 47histone modification
  • 29control
  • 24broad histone mark
  • 23narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 59November, 2017
  • 43August, 2017
  • 24February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 142fastq
  • 137bam
  • 113bigWig
  • 94bed narrowPeak
  • 64bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 133Homo sapiens
Biosample type
  • 62cell line
  • 37primary cell
  • 24in vitro differentiated cells
  • 10tissue
Organ
  • 65liver
  • 29pancreas
  • 26epithelium
  • 9embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 133AMP
Genome assembly (visualization)
  • 108hg19
  • 88GRCh38
Lab
  • 133AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 14inconsistent control read length
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

133 results

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ChIP-seq
RRBS
DNase-seq
cell line
HepG261
GM128781
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast911
in vitro differentiated cells
pancreatic endoderm9
definitive endodermal cell3
embryonic stem cell3
endocrine cell3
posterior foregut3
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
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