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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 136ChIP-seq
  • 6WGBS
  • 5GRO-seq
  • 3single cell RNA-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 136DNA binding
  • 6DNA methylation
  • 4DNA accessibility
  • 3Transcription
Target of assay
  • 58transcription factor
  • 57histone
  • 57histone modification
  • 35RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • 20chromatin remodeller
  • 20control
Date released
  • 52December, 2017
  • 24November, 2018
  • 22November, 2017
  • 21October, 2018
  • 12August, 2017
  • 12January, 2019
  • 5January, 2018
  • 2December, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 187fastq
  • 178bam
  • 160bigWig
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 154Homo sapiens
Biosample type
  • 52in vitro differentiated cells
  • 48cell line
  • 47tissue
  • 4stem cell
  • 3primary cell
Organ
  • 62liver
  • 25pancreas
  • 19epithelium
  • 14embryo
  • 10blood
  • 10bodily fluid
  • 9connective tissue
  • 7spleen
  • 4adipose tissue
  • 2brain
Project
  • 153AMP
  • 1HPAP
Genome assembly (visualization)
  • 124GRCh38
  • 120hg19
  • 5hg18
Lab
  • 152AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

154 results

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Clear Filters
ChIP-seq
WGBS
GRO-seq
single cell RNA-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
hepatocyte15
pancreatic endoderm91
Posterior foregut51
definitive endodermal cell51
primitive gut cell51
cell line
HepG238
GM1287810
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
stem cell
hESC31
primary cell
pancreatic cell2
Langerhans cell1
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