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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
26
ATAC-seq
22
total RNA-seq
5
WGBS
2
single cell RNA-seq
Assay category
133
DNA binding
26
DNA accessibility
24
Transcription
5
DNA methylation
Target of assay
104
transcription factor
26
control
18
RNA binding protein
3
chromatin remodeller
Date released
39
November, 2017
32
December, 2018
27
October, 2018
24
May, 2022
18
September, 2020
17
November, 2018
13
August, 2017
8
January, 2019
6
October, 2017
4
December, 2017
Available data
233
fastq
209
bam
159
bigWig
126
bed narrowPeak
102
bigBed narrowPeak
tsv
6
txt
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
188
Homo sapiens
Biosample type
88
cell line
82
tissue
18
primary cell
Organ
58
pancreas
49
liver
45
blood
45
bodily fluid
26
adipose tissue
26
connective tissue
16
epithelium
8
spleen
Project
170
AMP
18
HPAP
Genome assembly (visualization)
133
hg19
118
GRCh38
Lab
146
AMP-T2D consortium
24
Kyle Gaulton, UCSD
18
Klaus Kaestner, Upenn
Audit category:
7
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
188 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
cell line
GM12878
45
HepG2
43
tissue
islet of Langerhans
18
6
body of pancreas
13
4
subcutaneous adipose tissue
8
1
spleen
7
1
omental fat pad
6
1
+ See 5 more…
primary cell
pancreatic alpha cell
15
Langerhans cell
2
pancreatic beta cell
1
See all biosamples
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