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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 133ChIP-seq
  • 26ATAC-seq
  • 22total RNA-seq
  • 5WGBS
  • 2single cell RNA-seq
Assay category
  • 133DNA binding
  • 26DNA accessibility
  • 24Transcription
  • 5DNA methylation
Target of assay
  • 104transcription factor
  • 26control
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • 27October, 2018
  • 24May, 2022
  • 18September, 2020
  • 17November, 2018
  • 13August, 2017
  • 8January, 2019
  • 6October, 2017
  • 4December, 2017
Available data
  • 233fastq
  • 209bam
  • 159bigWig
  • 126bed narrowPeak
  • 102bigBed narrowPeak
  • tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 188Homo sapiens
Biosample type
  • 88cell line
  • 82tissue
  • 18primary cell
Organ
  • 58pancreas
  • 49liver
  • 45blood
  • 45bodily fluid
  • 26adipose tissue
  • 26connective tissue
  • 16epithelium
  • 8spleen
Project
  • 170AMP
  • 18HPAP
Genome assembly (visualization)
  • 133hg19
  • 118GRCh38
Lab
  • 146AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 18Klaus Kaestner, Upenn
Audit category:
  • 7missing controlled_by
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

188 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
cell line
GM1287845
HepG243
tissue
islet of Langerhans186
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
primary cell
pancreatic alpha cell15
Langerhans cell2
pancreatic beta cell1
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