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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 76total RNA-seq
  • 10ChIP-seq
  • 1DNase-seq
  • 1WGBS
Assay category
  • 76Transcription
  • 10DNA binding
  • 1DNA accessibility
  • 1DNA methylation
Target of assay
  • 10transcription factor
  • 1RNA binding protein
Date released
  • 76February, 2023
  • 5November, 2018
  • 4August, 2017
  • 2November, 2017
  • 1December, 2018
Available data
  • 211fastq
  • 135bam
  • 135bigWig
  • tsv
  • 8bed narrowPeak
  • 8bigBed narrowPeak
  • 1bed bedMethyl
  • 1bed broadPeak
  • 1bigBed bedMethyl
  • 1bigBed broadPeak
Organism
  • 88Homo sapiens
Biosample type
  • 77primary cell
  • 7cell line
  • 4tissue
Organ
  • 38pancreas
  • 37epithelium
  • 4blood
  • 4bodily fluid
  • 3adipose tissue
  • 3connective tissue
  • 3liver
Project
  • 76HPAP
  • 12AMP
Genome assembly (visualization)
  • 11GRCh38
  • 11hg19
Lab
  • 76Klaus Kaestner, Upenn
  • 12AMP-T2D consortium
Audit category:
  • 3missing controlled_by
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

88 results

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total RNA-seq
ChIP-seq
DNase-seq
WGBS
primary cell
exocrine cell39
pancreatic alpha cell27
pancreatic beta cell10
skeletal muscle myoblast1
cell line
GM128784
HepG23
tissue
white adipose tissue3
pancreas1
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