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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
4
Hi-C
1
RRBS
1
WGBS
Assay category
66
DNA binding
44
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
6
July, 2019
Available data
115
bam
92
bed narrowPeak
92
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
116
Homo sapiens
Biosample type
116
tissue
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
116
AMP
Genome assembly (visualization)
93
hg19
92
GRCh38
Lab
116
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
lab.title!
Anna Gloyn, Oxford
organ_slims!
ovary
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
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