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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
148
DNA binding
37
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
82
October, 2019
49
November, 2017
30
June, 2019
13
May, 2019
7
July, 2019
6
October, 2017
2
November, 2018
1
February, 2023
Available data
182
bam
162
bigWig
142
bed narrowPeak
73
tagAlign
69
bigBed narrowPeak
43
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
190
Homo sapiens
Biosample type
172
tissue
18
primary cell
Organ
535
liver
451
pancreas
324
epithelium
315
kidney
190
brain
168
heart
162
connective tissue
123
vasculature
117
blood vessel
101
bone element
81
limb
70
adipose tissue
69
artery
69
blood
69
bodily fluid
67
musculature of body
56
eye
22
nerve
20
spleen
19
embryo
19
lung
18
ureter
16
skeleton
13
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
190
AMP
Genome assembly (visualization)
144
GRCh38
127
hg19
Lab
190
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
tsv
lab.title!
Karen Mohlke, UNC
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
190 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
7
14
1
1
layer of hippocampus
11
angular gyrus
8
caudate nucleus
7
1
substantia nigra
8
+ See 72 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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