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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
33
DNA binding
9
DNA accessibility
Target of assay
26
transcription factor
8
RNA binding protein
8
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
33
bam
33
fastq
28
bigWig
27
bed narrowPeak
27
bigBed narrowPeak
Organism
42
Homo sapiens
Biosample type
34
cell line
8
primary cell
Organ
616
liver
527
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
56
eye
42
blood
42
bodily fluid
38
nerve
23
embryo
22
vein
19
lung
18
ureter
17
spleen
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
34
AMP
8
T1D
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
34
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
tsv
lab.title!
Mark McCarthy, Oxford
month_released!
December, 2018
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
33
1
primary cell
peripheral blood mononuclear cell
8
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