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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
7
ChIP-seq
6
ATAC-seq
4
Hi-C
1
WGBS
Assay category
38
DNA accessibility
7
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
1
control
Date released
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
Available data
46
bam
44
bed narrowPeak
39
bigWig
38
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
50
Homo sapiens
Biosample type
50
tissue
Organ
611
liver
509
pancreas
336
epithelium
306
kidney
219
heart
202
connective tissue
175
brain
121
vasculature
115
blood vessel
101
bone element
89
adipose tissue
87
musculature of body
69
blood
69
bodily fluid
57
artery
50
limb
35
eye
24
spleen
23
embryo
19
lung
18
ureter
16
skeleton
1
bone marrow
1
pericardium
1
thymus
1
vein
Project
50
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
lab.title!
Mark McCarthy, Oxford
month_released!
October, 2019
organ_slims!
lymph node
BIOSAMPLE
ASSAY
50 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
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