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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
77
DNA accessibility
77
DNA binding
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
97
histone
97
histone modification
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
36
February, 2023
35
June, 2019
30
April, 2019
20
May, 2024
14
February, 2021
14
July, 2019
14
May, 2019
3
October, 2019
2
March, 2020
Available data
174
bam
tsv
167
bigWig
134
bed narrowPeak
60
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
168
Homo sapiens
Biosample type
145
tissue
14
cell line
9
primary cell
Organ
575
liver
451
pancreas
324
epithelium
315
kidney
190
brain
168
heart
162
connective tissue
123
vasculature
117
blood vessel
101
bone element
81
limb
70
adipose tissue
69
artery
69
blood
69
bodily fluid
67
musculature of body
56
eye
22
nerve
20
spleen
19
embryo
18
ureter
16
skeleton
13
vein
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
168
AMP
Genome assembly (visualization)
139
GRCh38
81
hg19
Lab
148
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
files.file_type!
tsv
lab.title!
Xin Sun, UCSD
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
coronary artery
5
36
2
heart left ventricle
20
2
3
4
1
1
heart
6
18
1
1
1
left cardiac atrium
20
1
heart right ventricle
6
1
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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