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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
270
DNA binding
15
DNA methylation
8
DNA accessibility
Target of assay
185
histone modification
184
histone
103
broad histone mark
80
narrow histone mark
47
transcription factor
38
control
8
RNA binding protein
3
chromatin remodeller
Date released
400
November, 2017
293
August, 2017
266
October, 2019
198
June, 2019
152
May, 2020
117
February, 2021
115
May, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
February, 2023
74
October, 2018
35
December, 2018
35
July, 2019
32
August, 2021
26
November, 2019
25
January, 2019
24
February, 2018
22
May, 2021
22
October, 2017
16
March, 2020
12
September, 2018
8
January, 2018
6
September, 2017
4
July, 2018
2
May, 2022
2
November, 2020
1
August, 2018
1
August, 2022
1
December, 2019
1
May, 2023
1
October, 2022
Available data
258
fastq
255
bigWig
253
bam
125
bed narrowPeak
tsv
85
tagAlign
41
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
286
Homo sapiens
Biosample type
195
tissue
68
in vitro differentiated cells
30
primary cell
Organ
125
connective tissue
99
pancreas
57
adipose tissue
54
liver
epithelium
26
musculature of body
Project
293
AMP
Genome assembly (visualization)
170
hg19
143
GRCh38
Lab
293
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
organ_slims!
epithelium
lung
BIOSAMPLE
ASSAY
293 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
48
3
1
islet of Langerhans
42
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 4 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic endocrine cell
12
See all biosamples
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