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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
190
DNA binding
37
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
13
October, 2017
7
July, 2019
2
November, 2018
1
February, 2023
Available data
216
bigWig
213
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
232
Homo sapiens
Biosample type
217
tissue
15
primary cell
Organ
451
liver
267
pancreas
232
brain
189
epithelium
166
connective tissue
165
heart
146
vasculature
141
blood vessel
127
kidney
100
bone element
98
limb
81
musculature of body
74
artery
66
adipose tissue
55
blood
55
bodily fluid
55
eye
27
nerve
20
vein
18
ureter
16
embryo
16
skeleton
16
spleen
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
232
AMP
Genome assembly (visualization)
205
GRCh38
149
hg19
Lab
232
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
tsv
organ_slims!
gonad
target.investigated_as!
control
BIOSAMPLE
ASSAY
232 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
17
14
1
1
layer of hippocampus
20
angular gyrus
14
caudate nucleus
13
1
substantia nigra
14
+ See 72 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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