Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
32
DNase-seq
3
Hi-C
2
ATAC-seq
2
RRBS
1
FAIRE-seq
Assay category
217
DNA binding
35
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
83
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
November, 2018
February, 2023
Available data
242
bam
221
bigWig
202
bed narrowPeak
127
bigBed narrowPeak
117
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
257
Homo sapiens
Biosample type
239
tissue
18
primary cell
Organ
617
liver
473
pancreas
330
kidney
318
epithelium
259
brain
192
connective tissue
189
heart
133
vasculature
127
blood vessel
115
limb
93
bone element
89
adipose tissue
87
musculature of body
69
blood
69
bodily fluid
48
artery
38
nerve
29
eye
24
spleen
23
embryo
22
vein
19
lung
18
ureter
8
skeleton
gonad
4
ovary
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
257
AMP
Genome assembly (visualization)
204
GRCh38
150
hg19
Lab
257
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
tsv
month_released!
February, 2023
organ_slims!
gonad
pituitary gland
BIOSAMPLE
ASSAY
257 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
ATAC-seq
RRBS
FAIRE-seq
tissue
brain
20
14
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
Download