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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
44
ATAC-seq
9
DNase-seq
3
Hi-C
1
FAIRE-seq
Assay category
99
DNA binding
54
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
July, 2019
5
June, 2019
3
November, 2017
2
March, 2020
Available data
171
bam
140
bigWig
127
bed narrowPeak
79
bigBed narrowPeak
tsv
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
1
tar
Organism
156
Homo sapiens
Biosample type
115
tissue
27
primary cell
14
cell line
Organ
614
liver
527
pancreas
360
epithelium
325
kidney
253
brain
211
heart
204
connective tissue
161
vasculature
156
blood vessel
110
limb
101
bone element
90
adipose tissue
82
artery
81
musculature of body
69
blood
69
bodily fluid
55
eye
38
nerve
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
156
AMP
Genome assembly (visualization)
126
GRCh38
97
hg19
Lab
156
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tsv
month_released!
July, 2019
organ_slims!
spleen
BIOSAMPLE
ASSAY
156 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
coronary artery
5
35
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
aorta
13
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
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