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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
14
total RNA-seq
4
DNase-seq
4
pCHi-C
2
ChIP-seq
Assay category
32
DNA accessibility
14
Transcription
2
DNA binding
Target of assay
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
27
February, 2023
19
October, 2019
6
June, 2019
July, 2019
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
52
Homo sapiens
Biosample type
49
tissue
3
primary cell
Organ
554
liver
454
pancreas
311
epithelium
310
kidney
171
connective tissue
171
heart
136
brain
135
vasculature
131
blood vessel
bone element
95
limb
78
adipose tissue
76
artery
68
blood
68
bodily fluid
68
musculature of body
52
eye
30
nerve
22
spleen
19
lung
18
ureter
16
skeleton
16
vein
15
embryo
1
bone marrow
1
pituitary gland
1
skin of body
1
thymus
Project
52
AMP
Genome assembly (visualization)
32
hg19
5
GRCh38
Lab
52
AMP-T2D consortium
files.file_type!
tsv
month_released!
July, 2019
organ_slims!
bone element
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
52 results
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Clear Filters
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
tissue
islet of Langerhans
1
14
4
retina
15
3
pigmented layer of retina
12
primary cell
retinal pigment epithelial cell
1
2
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