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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
29
ATAC-seq
14
total RNA-seq
6
Hi-C
6
RRBS
4
pCHi-C
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
31
DNA binding
30
DNA accessibility
15
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
4
control
Date released
June, 2019
27
February, 2023
26
August, 2017
21
October, 2019
7
July, 2019
7
May, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
46
bed narrowPeak
27
bigWig
15
tagAlign
14
bam
tsv
13
bed broadPeak
6
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
93
Homo sapiens
Biosample type
91
tissue
2
primary cell
Organ
615
liver
525
pancreas
348
epithelium
249
kidney
230
brain
190
heart
188
connective tissue
161
vasculature
157
blood vessel
101
bone element
89
adipose tissue
83
limb
81
artery
69
blood
69
bodily fluid
49
eye
44
musculature of body
38
nerve
24
spleen
23
embryo
22
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
93
AMP
Genome assembly (visualization)
54
hg19
6
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
tsv
month_released!
June, 2019
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
islet of Langerhans
2
1
14
4
retina
15
pigmented layer of retina
12
muscle of leg
7
1
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primary cell
retinal pigment epithelial cell
1
skeletal muscle cell
1
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