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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
10
single cell RNA-seq
10
snATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
64
DNA binding
20
DNA accessibility
10
Transcription
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
control
3
other context
3
other post-translational modification
Date released
335
November, 2017
272
August, 2017
255
October, 2019
217
May, 2021
210
June, 2019
200
May, 2022
189
February, 2023
184
August, 2021
153
February, 2021
129
May, 2020
97
May, 2019
82
November, 2018
73
December, 2017
66
April, 2019
59
September, 2020
47
September, 2018
47
September, 2023
45
October, 2018
43
July, 2019
40
May, 2024
39
November, 2019
31
December, 2018
21
January, 2019
20
October, 2017
19
April, 2020
19
March, 2020
16
February, 2018
16
January, 2021
15
May, 2023
8
January, 2018
7
August, 2020
7
November, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
82
fastq
81
bam
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
100
Homo sapiens
Biosample type
58
cell line
42
tissue
1
primary cell
Organ
53
liver
19
lung
12
blood
12
bodily fluid
7
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
82
AMP
19
LungMap
Genome assembly (visualization)
79
GRCh38
71
hg19
Lab
82
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tsv
organ_slims!
ovary
target.investigated_as!
control
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
45
1
GM12878
12
tissue
lung
9
10
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
primary cell
pancreatic cell
1
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