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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 296ChIP-seq
  • 9WGBS
  • 6RRBS
  • 5ATAC-seq
  • 5DNase-seq
  • 1FAIRE-seq
Assay category
  • 296DNA binding
  • 15DNA methylation
  • 11DNA accessibility
Target of assay
  • 199histone modification
  • 198histone
  • 109broad histone mark
  • 88narrow histone mark
  • 50control
  • 47transcription factor
  • 8RNA binding protein
  • 3chromatin remodeller
Date released
  • 406November, 2017
  • 322August, 2017
  • 298October, 2019
  • 226May, 2021
  • 218June, 2019
  • 200May, 2022
  • 196August, 2021
  • 189February, 2023
  • 156February, 2021
  • 152May, 2020
  • 120May, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 74October, 2018
  • 59September, 2020
  • 47September, 2018
  • 47September, 2023
  • 43July, 2019
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 25January, 2019
  • 24February, 2018
  • 23October, 2017
  • 19April, 2020
  • 19March, 2020
  • 16January, 2021
  • 15May, 2023
  • 12November, 2020
  • 11September, 2017
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4July, 2018
  • 4October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1December, 2019
Available data
  • 287fastq
  • 282bam
  • 272bigWig
  • 142bed narrowPeak
  • tsv
  • 85tagAlign
  • 42bigBed narrowPeak
  • 41bed broadPeak
  • 33bed bed3+
  • 15bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 315Homo sapiens
Biosample type
  • 195tissue
  • 68in vitro differentiated cells
  • 59primary cell
Organ
  • 125connective tissue
  • 99pancreas
  • 57adipose tissue
  • 54liver
  • 29epithelium
  • 26musculature of body
Project
  • 322AMP
Genome assembly (visualization)
  • 187hg19
  • 160GRCh38
Lab
  • 322AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

322 results

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Clear Filters
ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver4831
islet of Langerhans4211
subcutaneous abdominal adipose tissue363
skeletal muscle tissue224
pancreas14
in vitro differentiated cells
adipocyte671
primary cell
skeletal muscle myoblast1512
pancreatic alpha cell131
pancreatic beta cell131
pancreatic endocrine cell12
pancreatic acinar cell1
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