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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
174
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
92
histone
92
histone modification
69
transcription factor
58
broad histone mark
34
narrow histone mark
29
control
26
RNA binding protein
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
340
November, 2017
322
August, 2017
291
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
72
November, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
194
bam
165
bigWig
155
bed narrowPeak
155
bigBed narrowPeak
76
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
tsv
1
bedpe bed3+
1
csv
Organism
193
Homo sapiens
Biosample type
141
tissue
45
cell line
6
primary cell
1
in vitro differentiated cells
Organ
50
blood vessel
50
vasculature
37
liver
30
brain
21
heart
15
blood
15
bodily fluid
9
pancreas
9
spleen
7
limb
7
musculature of body
5
artery
5
epithelium
5
kidney
2
adipose tissue
2
connective tissue
Project
193
AMP
Genome assembly (visualization)
160
GRCh38
155
hg19
Lab
193
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tsv
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
193 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 12 more…
cell line
HepG2
29
1
GM12878
15
primary cell
kidney epithelial cell
5
pancreatic cell
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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