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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
84
RNA microarray
27
snATAC-seq
22
ATAC-seq
13
single cell RNA-seq
2
pCHi-C
Assay category
128
DNA binding
49
DNA accessibility
13
Transcription
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
10
transcription factor
5
RNA binding protein
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
692
bam
648
bigWig
tsv
120
bed narrowPeak
97
bigBed narrowPeak
89
txt
45
fastq
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
276
Homo sapiens
Biosample type
208
tissue
46
primary cell
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
64
blood vessel
64
vasculature
35
heart
28
brain
19
artery
13
limb
8
skeleton
7
musculature of body
6
connective tissue
5
epithelium
5
kidney
3
liver
2
pancreas
Project
237
AMP
39
HPAP
Genome assembly (visualization)
126
hg19
119
GRCh38
Lab
237
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
87
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
month_released!
May, 2023
BIOSAMPLE
ASSAY
276 results
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Clear Filters
ChIP-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 16 more…
primary cell
Langerhans cell
27
12
kidney epithelial cell
5
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
6
8
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
See all biosamples
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