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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
78
ChIP-seq
27
snATAC-seq
17
ATAC-seq
14
single cell RNA-seq
8
DNase-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
78
DNA binding
53
DNA accessibility
14
Transcription
7
DNA methylation
Target of assay
69
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
294
October, 2019
225
May, 2021
200
June, 2019
200
May, 2022
197
August, 2017
191
August, 2021
175
February, 2023
152
May, 2020
150
February, 2021
120
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
59
September, 2020
51
October, 2018
47
September, 2018
47
September, 2023
41
July, 2019
40
May, 2024
40
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
22
October, 2017
19
March, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2022
1
December, 2019
Available data
207
bam
180
bigWig
132
fastq
tsv
94
bed narrowPeak
89
txt
72
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
8
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
7
csv
1
bed bed3
Organism
237
Homo sapiens
Biosample type
118
tissue
79
cell line
40
primary cell
Organ
92
bone element
56
liver
15
blood
15
bodily fluid
14
artery
14
blood vessel
14
heart
14
vasculature
9
spleen
8
skeleton
connective tissue
7
pancreas
6
limb
2
brain
1
adipose tissue
Project
198
AMP
39
HPAP
Genome assembly (visualization)
100
GRCh38
93
hg19
Lab
198
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tsv
organ_slims!
connective tissue
lung
BIOSAMPLE
ASSAY
237 results
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Clear Filters
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
tissue
bone element
84
spleen
6
1
2
liver
4
1
2
body of pancreas
2
2
pancreas
2
1
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cell line
HepG2
45
1
1
1
GM12878
15
smooth muscle cell of the coronary artery
6
8
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic cell
1
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