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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
30
ATAC-seq
27
snATAC-seq
13
single cell RNA-seq
11
ChIP-seq
2
pCHi-C
Assay category
57
DNA accessibility
13
Transcription
11
DNA binding
Target of assay
12
histone
histone modification
10
broad histone mark
6
control
5
transcription factor
2
narrow histone mark
Date released
318
November, 2017
200
May, 2022
199
June, 2019
189
February, 2023
176
August, 2021
156
February, 2021
125
May, 2020
123
August, 2017
102
October, 2019
88
November, 2018
86
May, 2021
63
December, 2017
59
September, 2020
47
September, 2023
44
October, 2018
43
July, 2019
35
December, 2018
31
November, 2019
28
May, 2019
20
April, 2019
19
April, 2020
18
January, 2019
16
January, 2021
16
March, 2020
15
May, 2023
15
September, 2018
12
November, 2020
11
October, 2017
11
September, 2017
8
February, 2018
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
581
bam
559
bigWig
tsv
89
txt
55
fastq
29
bed narrowPeak
10
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
bed broadPeak
Organism
167
Homo sapiens
Biosample type
104
tissue
41
primary cell
18
cell line
4
in vitro differentiated cells
Organ
92
bone element
14
artery
14
blood vessel
14
heart
14
vasculature
8
skeleton
7
connective tissue
6
limb
5
pancreas
4
brain
3
liver
1
adipose tissue
1
spleen
Project
128
AMP
39
HPAP
Genome assembly (visualization)
36
hg19
31
GRCh38
Lab
127
AMP-T2D consortium
39
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
files.file_type!
tsv
month_released!
February, 2020
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
167 results
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Clear Filters
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
tissue
bone element
84
body of pancreas
4
brain
3
cerebellum (Hemisphere)
1
distal epiphysis
1
+ See 11 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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