Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84RNA microarray
  • 27snATAC-seq
  • 22ATAC-seq
  • 13single cell RNA-seq
  • 8ChIP-seq
  • 2pCHi-C
Assay category
  • 49DNA accessibility
  • 13Transcription
  • 8DNA binding
Target of assay
  • 5transcription factor
  • 3control
Date released
  • 406November, 2017
  • 322August, 2017
  • 298October, 2019
  • 226May, 2021
  • 218June, 2019
  • 200May, 2022
  • 196August, 2021
  • 189February, 2023
  • 156February, 2021
  • 152May, 2020
  • 120May, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 74October, 2018
  • 59September, 2020
  • 47September, 2018
  • 47September, 2023
  • 43July, 2019
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 25January, 2019
  • 24February, 2018
  • 23October, 2017
  • 19April, 2020
  • 19March, 2020
  • 16January, 2021
  • 15May, 2023
  • 12November, 2020
  • 11September, 2017
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4July, 2018
  • 4October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1December, 2019
Available data
  • 572bam
  • tsv
  • 551bigWig
  • 89txt
  • 45fastq
  • 23bed narrowPeak
  • 8tagAlign
  • 6csv
  • 4bed bedgraph
  • 2bed bed3
  • 2bed bed3+
Organism
  • 156Homo sapiens
Biosample type
  • 93tissue
  • 41primary cell
  • 18cell line
  • 4in vitro differentiated cells
Organ
  • 92bone element
  • 14artery
  • 14blood vessel
  • 14heart
  • 14vasculature
  • 8skeleton
  • 6connective tissue
  • 6limb
  • 3liver
Project
  • 117AMP
  • 39HPAP
Genome assembly (visualization)
  • 29hg19
  • 23GRCh38
Lab
  • 117AMP-T2D consortium
  • 39Klaus Kaestner, Upenn
Audit category:
  • 84inconsistent ontology term
  • 27audit script error
  • 1inconsistent replicate
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

156 results

search-icontable-tab-icon
Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
tissue
bone element84
distal epiphysis1
distal epiphysis of femur1
distal epiphysis of humerus1
distal epiphysis of tibia1
primary cell
Langerhans cell2712
osteoblast11
cell line
smooth muscle cell of the coronary artery86
HepG211
iPSC derived cell line2
in vitro differentiated cells
adipocyte4
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego