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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
50
ChIP-seq
2
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
100
DNA accessibility
50
DNA binding
6
Transcription
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
406
November, 2017
322
August, 2017
294
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
283
bam
260
bigWig
tsv
50
tagAlign
27
bed narrowPeak
1
hic
Organism
153
Homo sapiens
Biosample type
103
primary cell
50
tissue
2
cell line
2
stem cell
Organ
50
liver
Project
152
AMP
4
community
1
ITG
Genome assembly (visualization)
72
hg19
20
GRCh38
Lab
152
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
4
inconsistent ontology term
files.file_type!
tsv
organ_slims!
ovary
BIOSAMPLE
ASSAY
157 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 25 more…
tissue
liver
50
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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