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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
8
total RNA-seq
Assay category
179
DNA accessibility
42
Transcription
41
DNA methylation
Date released
292
October, 2019
268
August, 2017
226
May, 2021
216
June, 2019
189
February, 2023
170
August, 2021
160
May, 2022
153
February, 2021
120
May, 2019
102
May, 2020
91
November, 2017
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
41
November, 2019
40
July, 2019
40
May, 2024
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
18
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
134
zippedFastqFolder
114
bam
90
bigWig
tsv
24
fastq
18
bed narrowPeak
7
txt
1
bed bed3+
Organism
262
Homo sapiens
Biosample type
236
primary cell
26
tissue
Organ
104
pancreas
liver
80
epithelium
2
musculature of body
Project
134
HPAP
128
AMP
Genome assembly (visualization)
64
hg19
Lab
134
Klaus Kaestner, Upenn
104
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
files.file_type!
tsv
month_released!
November, 2018
organ_slims!
liver
BIOSAMPLE
ASSAY
262 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
+ See 28 more…
tissue
islet of Langerhans
18
6
skeletal muscle tissue
1
1
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