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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
18
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
153
DNA binding
18
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
138
histone
138
histone modification
76
broad histone mark
62
narrow histone mark
15
transcription factor
control
5
RNA binding protein
Date released
331
November, 2017
255
August, 2017
230
October, 2019
198
May, 2021
June, 2019
179
August, 2021
153
February, 2021
139
February, 2023
129
May, 2020
120
May, 2022
93
May, 2019
82
November, 2018
66
April, 2019
57
December, 2017
47
September, 2023
45
October, 2018
40
May, 2024
40
September, 2020
35
July, 2019
31
December, 2018
26
November, 2019
21
January, 2019
20
October, 2017
19
April, 2020
16
February, 2018
16
January, 2021
16
March, 2020
15
May, 2023
12
September, 2018
8
January, 2018
5
March, 2019
5
March, 2023
4
July, 2018
4
November, 2020
1
August, 2018
1
August, 2022
1
December, 2019
1
October, 2022
Available data
291
bigWig
267
bam
tsv
130
bed narrowPeak
87
tagAlign
2
bed bed3+
Organism
198
Homo sapiens
Biosample type
151
primary cell
45
in vitro differentiated cells
2
tissue
Organ
20
pancreas
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
101
T1D
97
AMP
Genome assembly (visualization)
137
hg19
100
GRCh38
Lab
176
Kyle Gaulton, UCSD
22
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
tsv
month_released!
June, 2019
organ_slims!
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
monocyte
85
13
1
1
1
CD8-positive, alpha-beta T cell
30
1
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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in vitro differentiated cells
embryonic stem cell
32
5
5
cardiomyocytes
3
tissue
pancreas
1
thymus
1
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