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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
Assay category
74
DNA binding
56
Transcription
3
DNA accessibility
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
March, 2020
16
January, 2021
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
7
November, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
101
fastq
76
bam
50
bigWig
45
bed narrowPeak
45
bigBed narrowPeak
19
zippedFastqFolder
tsv
Organism
133
Homo sapiens
Biosample type
74
tissue
59
primary cell
Organ
70
pancreas
23
adipose tissue
23
connective tissue
19
epithelium
Project
74
AMP
59
HPAP
Genome assembly (visualization)
48
GRCh38
45
hg19
Lab
74
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control read length
files.file_type!
tsv
organ_slims!
lung
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
133 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
pancreas
2
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
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