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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 242ChIP-seq
  • 22ATAC-seq
  • 14total RNA-seq
  • 10DNase-seq
  • 5Hi-C
  • 4pCHi-C
  • 1FAIRE-seq
Assay category
  • 242DNA binding
  • 33DNA accessibility
  • 14Transcription
  • 53D chromatin structure
Target of assay
  • 196histone
  • 196histone modification
  • 141narrow histone mark
  • 55broad histone mark
  • 39control
  • 7recombinant protein
  • 7transcription factor
Date released
  • 406November, 2017
  • 322August, 2017
  • 298October, 2019
  • 226May, 2021
  • 218June, 2019
  • 200May, 2022
  • 196August, 2021
  • 189February, 2023
  • 156February, 2021
  • 152May, 2020
  • 120May, 2019
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 74October, 2018
  • 59September, 2020
  • 47September, 2018
  • 47September, 2023
  • 43July, 2019
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 25January, 2019
  • 24February, 2018
  • 23October, 2017
  • 19April, 2020
  • 19March, 2020
  • 16January, 2021
  • 15May, 2023
  • 12November, 2020
  • 11September, 2017
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4July, 2018
  • 4October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1December, 2019
Available data
  • 250bam
  • 207bigWig
  • 189bed narrowPeak
  • 70bigBed narrowPeak
  • 49tagAlign
  • tsv
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 8bed bed3+
  • 4hic
  • 3bedpe bed3+
  • 1hdf5
  • 1tagAlign bed3+
  • 1tar
Organism
  • 298Homo sapiens
Biosample type
  • 234tissue
  • 32primary cell
  • 26cell line
  • 6in vitro differentiated cells
Organ
  • 85brain
  • 65limb
  • 47blood vessel
  • 47vasculature
  • 38nerve
  • 32epithelium
  • 26artery
  • 24kidney
  • 21eye
  • 21vein
  • 18pancreas
  • 6heart
  • 6liver
  • 4connective tissue
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1adipose tissue
  • 1lymph node
  • 1skin of body
Project
  • 298AMP
Genome assembly (visualization)
  • 201hg19
  • 191GRCh38
Lab
  • 298AMP-T2D consortium
Audit category:
  • 18inconsistent ontology term
  • 1audit script error
Audit category:
  • 1inconsistent assembly
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

298 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
tissue
islet of Langerhans2113144
tibial nerve3512
tibial artery2312
heart51
brain5
primary cell
endothelial cell of umbilical vein17211
epithelial cell of proximal tubule7
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
kidney glomerular epithelial cell1
cell line
Panc11311
RCC 7860 HIF1a re-expression4
RCC 7860 HIF2a over-expression3
RCC 7860 vector3
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte2
cardiac precursors (cardiac muscle cell)11
cardiomyocytes (cardiac muscle cell)11
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