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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
34
ATAC-seq
15
total RNA-seq
6
DNase-seq
6
WGBS
5
pCHi-C
1
RNA microarray
1
RRBS
Assay category
78
DNA binding
40
DNA accessibility
15
Transcription
7
DNA methylation
Target of assay
35
histone
35
histone modification
25
control
20
broad histone mark
18
transcription factor
15
narrow histone mark
6
RNA binding protein
Date released
57
August, 2017
28
February, 2023
23
October, 2018
22
October, 2019
8
June, 2019
1
August, 2018
1
August, 2021
1
January, 2018
1
July, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
449
bam
431
bigWig
tsv
46
bed narrowPeak
44
fastq
16
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
145
Homo sapiens
Biosample type
140
tissue
5
primary cell
1
in vitro differentiated cells
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
146
AMP
Genome assembly (visualization)
62
hg19
32
GRCh38
Lab
146
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
organ_slims!
mammary gland
skeleton
BIOSAMPLE
ASSAY
146 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
2
1
14
4
retina
15
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
+ See 4 more…
primary cell
retinal pigment epithelial cell
3
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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