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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 73ChIP-seq
  • 6ATAC-seq
  • 6WGBS
  • 2DNase-seq
  • 1RNA microarray
  • 1pCHi-C
  • 1total RNA-seq
Assay category
  • 73DNA binding
  • 8DNA accessibility
  • 6DNA methylation
  • 1Transcription
Target of assay
  • 32histone
  • 32histone modification
  • 24control
  • 20broad histone mark
  • 17transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 57August, 2017
  • 23October, 2018
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 442bam
  • 425bigWig
  • tsv
  • 44fastq
  • 13bed narrowPeak
  • 10bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 89Homo sapiens
Biosample type
  • 89tissue
  • 1in vitro differentiated cells
Organ
  • 617liver
  • 529pancreas
  • 368epithelium
  • 330kidney
  • 260brain
  • 225heart
  • 206connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 101bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 90AMP
Genome assembly (visualization)
  • 28hg19
  • 26GRCh38
Lab
  • 90AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

90 results

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Clear Filters
ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue363
omental fat pad1112
subcutaneous adipose tissue1211
white adipose tissue12
adipose tissue2331
in vitro differentiated cells
white fat cell1
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