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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
37
DNase-seq
30
ATAC-seq
14
total RNA-seq
9
snATAC-seq
6
Hi-C
6
RRBS
4
pCHi-C
1
WGBS
1
single cell RNA-seq
Assay category
76
DNA accessibility
67
DNA binding
15
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
52
transcription factor
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
13
control
11
RNA binding protein
10
chromatin remodeller
Date released
41
June, 2019
27
December, 2018
27
February, 2023
19
October, 2019
17
January, 2019
15
November, 2018
8
January, 2021
7
August, 2017
7
July, 2019
2
January, 2018
2
March, 2020
2
May, 2022
1
May, 2019
Available data
118
bed narrowPeak
108
bam
100
bigWig
91
bigBed narrowPeak
61
fastq
38
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
hic
2
tagAlign
1
txt
Organism
175
Homo sapiens
Biosample type
99
tissue
60
cell line
16
primary cell
Organ
515
liver
378
pancreas
300
kidney
275
epithelium
128
connective tissue
128
heart
101
bone element
97
vasculature
92
blood vessel
73
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
54
musculature of body
53
eye
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
167
AMP
8
T1D
Genome assembly (visualization)
127
hg19
92
GRCh38
Lab
167
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
1
inconsistent control
files.file_type!
tsv
target.investigated_as!
histone
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
snATAC-seq
Hi-C
RRBS
pCHi-C
WGBS
single cell RNA-seq
tissue
islet of Langerhans
1
14
4
retina
3
15
muscle of arm
17
muscle of leg
1
13
1
pigmented layer of retina
12
+ See 5 more…
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
2
1
1
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
See all biosamples
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