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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
46
ATAC-seq
8
DNase-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
55
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
6
July, 2019
4
June, 2019
3
November, 2017
2
March, 2020
1
May, 2021
Available data
179
bam
149
bigWig
128
bed narrowPeak
78
bigBed narrowPeak
tsv
12
bed broadPeak
12
bigBed broadPeak
10
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
162
Homo sapiens
Biosample type
120
tissue
28
primary cell
14
cell line
Organ
617
liver
529
pancreas
368
epithelium
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
161
AMP
1
T1D
Genome assembly (visualization)
128
GRCh38
101
hg19
Lab
161
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
files.file_type!
tsv
organ_slims!
intestine
kidney
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
1
2
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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