Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 60ChIP-seq
  • 8snATAC-seq
  • 1ATAC-seq
Assay category
  • 60DNA binding
  • 9DNA accessibility
Target of assay
  • 51transcription factor
  • 10RNA binding protein
  • 10chromatin remodeller
  • 6control
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 27December, 2018
  • 18January, 2019
  • 15November, 2018
  • 8January, 2021
  • 1January, 2018
Available data
  • 60bam
  • 60fastq
  • 55bigWig
  • 54bed narrowPeak
  • 54bigBed narrowPeak
Organism
  • 69Homo sapiens
Biosample type
  • 61cell line
  • 8primary cell
Organ
  • 617liver
  • 529pancreas
  • 368epithelium
  • 330kidney
  • 260brain
  • 225heart
  • 206connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 101bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 61AMP
  • 8T1D
Genome assembly (visualization)
  • 55hg19
  • 54GRCh38
Lab
  • 61AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
Audit category:
  • 1inconsistent control
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

69 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878601
primary cell
peripheral blood mononuclear cell8
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego