Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
39
ChIP-seq
33
DNase-seq
13
ATAC-seq
6
Hi-C
5
RRBS
4
total RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
47
DNA accessibility
39
DNA binding
6
3D chromatin structure
6
DNA methylation
5
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
92
February, 2021
43
June, 2019
26
August, 2017
8
February, 2023
7
May, 2019
6
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
1
May, 2021
Available data
89
txt
68
bed narrowPeak
68
bigWig
65
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
tsv
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
188
Homo sapiens
Biosample type
175
tissue
13
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
187
AMP
1
T1D
Genome assembly (visualization)
79
hg19
55
GRCh38
Lab
187
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
93
inconsistent ontology term
1
audit script error
files.file_type!
tsv
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
188 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
total RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
bone element
84
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
+ See 15 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
megakaryocyte
1
See all biosamples
Download