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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
20
ChIP-seq
13
ATAC-seq
4
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
20
DNA binding
14
DNA accessibility
4
Transcription
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
92
February, 2021
9
November, 2018
8
February, 2023
7
December, 2018
7
January, 2019
1
May, 2021
1
October, 2017
Available data
90
bam
88
txt
74
bigWig
tsv
24
fastq
22
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
125
Homo sapiens
Biosample type
124
tissue
1
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
skin of body
1
thymus
Project
124
AMP
1
T1D
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
124
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
files.file_type!
tsv
organ_slims!
skin of body
BIOSAMPLE
ASSAY
125 results
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RNA microarray
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
bone element
84
spleen
20
1
2
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
megakaryocyte
1
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