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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
  • 32DNase-seq
  • 4ATAC-seq
  • 3Hi-C
  • 2RRBS
  • 1FAIRE-seq
Assay category
  • 218DNA binding
  • 37DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 187histone
  • 187histone modification
  • 117narrow histone mark
  • 70broad histone mark
  • 28control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • 85October, 2019
  • 30June, 2019
  • 28May, 2019
  • 16October, 2017
  • 7July, 2019
  • 2November, 2018
  • 1February, 2023
Available data
  • 243bam
  • 222bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 260Homo sapiens
Biosample type
  • 242tissue
  • 18primary cell
Organ
  • 617liver
  • 529pancreas
  • 368epithelium
  • 330kidney
  • 260brain
  • 225heart
  • 206connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 101bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 260AMP
Genome assembly (visualization)
  • 205GRCh38
  • 152hg19
Lab
  • 260AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 4missing controlled_by
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

260 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain201411
layer of hippocampus23
caudate nucleus151
substantia nigra16
angular gyrus15
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell311
brain pericyte11
astrocyte of the hippocampus1
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