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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 153ChIP-seq
  • 25ATAC-seq
  • 9DNase-seq
  • 6WGBS
  • 5total RNA-seq
  • 3pCHi-C
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 153DNA binding
  • 34DNA accessibility
  • 7DNA methylation
  • 5Transcription
  • 13D chromatin structure
Target of assay
  • 78histone
  • 78histone modification
  • 44broad histone mark
  • 40transcription factor
  • 35control
  • 33narrow histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
Date released
  • 125August, 2017
  • 23October, 2018
  • 18June, 2019
  • 14February, 2023
  • 6February, 2021
  • 5August, 2021
  • 4October, 2019
  • 2July, 2019
  • 2November, 2020
  • 1August, 2018
  • 1January, 2018
  • 1May, 2021
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 593bam
  • 570bigWig
  • tsv
  • 101fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 205Homo sapiens
Biosample type
  • 92in vitro differentiated cells
  • 90tissue
  • 24primary cell
Organ
  • 617liver
  • 529pancreas
  • 368epithelium
  • 330kidney
  • 260brain
  • 225heart
  • 206connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 101bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 205AMP
  • 1T1D
Genome assembly (visualization)
  • 115hg19
  • 92GRCh38
Lab
  • 201AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 18inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

206 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
total RNA-seq
pCHi-C
Capture-C
Hi-C
RNA microarray
RRBS
in vitro differentiated cells
adipocyte678111
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
tissue
subcutaneous abdominal adipose tissue363
omental fat pad1112
subcutaneous adipose tissue1211
white adipose tissue12
adipose tissue2331
primary cell
cardiac fibroblast531
mesenchymal stem cell7
osteoblast211
brain pericyte11
adult endothelial progenitor cell1
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