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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
Assay category
15
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
18
histone
histone modification
15
control
10
narrow histone mark
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
6
November, 2018
4
December, 2017
4
December, 2018
3
February, 2018
1
January, 2018
1
January, 2019
1
October, 2017
Available data
33
bam
24
fastq
19
bigWig
tsv
2
bed bed3+
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
20
Homo sapiens
Biosample type
12
tissue
8
in vitro differentiated cells
Organ
359
pancreas
290
kidney
266
epithelium
176
liver
111
heart
101
bone element
88
connective tissue
88
vasculature
84
blood vessel
70
brain
66
limb
58
artery
54
musculature of body
52
eye
41
adipose tissue
19
lung
18
ureter
17
blood
17
bodily fluid
16
skeleton
14
nerve
12
spleen
8
embryo
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
20
AMP
Genome assembly (visualization)
5
GRCh38
3
hg19
1
hg18
Lab
20
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
target.investigated_as!
histone modification
transcription factor
BIOSAMPLE
ASSAY
20 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
tissue
spleen
8
2
1
1
in vitro differentiated cells
pancreatic endoderm
5
1
Hepatic endoderm
2
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