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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 129ChIP-seq
  • 102ATAC-seq
  • 53total RNA-seq
  • 41WGBS
  • 19DNase-seq
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
Assay category
  • 129DNA binding
  • 122DNA accessibility
  • 53Transcription
  • 47DNA methylation
  • 83D chromatin structure
Target of assay
  • 93histone
  • 93histone modification
  • 49narrow histone mark
  • 44broad histone mark
  • 30control
  • 9transcription factor
  • 8RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 80May, 2022
  • 50February, 2023
  • 35September, 2018
  • 32October, 2019
  • 29August, 2017
  • 20June, 2019
  • 20May, 2021
  • 19December, 2017
  • 19September, 2020
  • 15November, 2019
  • 8July, 2019
  • 7August, 2020
  • 6August, 2021
  • 6November, 2017
  • 6November, 2020
  • 5May, 2019
  • 5September, 2017
  • 3March, 2020
  • 3October, 2022
Available data
  • 317bam
  • 301bigWig
  • 257fastq
  • tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 367Homo sapiens
Biosample type
  • 290primary cell
  • 44cell line
  • 22in vitro differentiated cells
  • 12tissue
Organ
  • 617liver
  • 529pancreas
  • 368epithelium
  • 330kidney
  • 260brain
  • 225heart
  • 206connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 101bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 220AMP
  • 146HPAP
  • 2T1D
Genome assembly (visualization)
  • 164hg19
  • 148GRCh38
Lab
  • 216AMP-T2D consortium
  • 146Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 55inconsistent ontology term
  • 4audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

368 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
primary cell
pancreatic alpha cell133542251
pancreatic beta cell132311161
endothelial cell of umbilical vein17221
pancreatic acinar cell891
pancreatic ductal cell134
cell line
EndoC_BH115181621
glomerular visceral epithelial cell1
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
tissue
pigmented layer of retina12
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