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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
36
DNase-seq
17
ATAC-seq
14
total RNA-seq
6
Hi-C
5
RRBS
4
pCHi-C
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
54
DNA accessibility
41
DNA binding
15
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
6
control
Date released
46
June, 2019
26
August, 2017
21
October, 2019
15
February, 2023
7
May, 2019
6
July, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
78
bed narrowPeak
71
bigWig
60
bam
50
bigBed narrowPeak
49
bed broadPeak
37
bed bed3+
36
bigBed broadPeak
15
tagAlign
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
126
Homo sapiens
Biosample type
114
tissue
12
primary cell
Organ
617
liver
529
pancreas
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
126
AMP
Genome assembly (visualization)
85
hg19
50
GRCh38
Lab
126
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
tsv
organ_slims!
epithelium
BIOSAMPLE
ASSAY
126 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
islet of Langerhans
2
1
14
4
muscle of leg
7
13
1
retina
3
15
muscle of arm
17
+ See 4 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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