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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
37
DNase-seq
30
ATAC-seq
14
total RNA-seq
6
Hi-C
6
RRBS
4
pCHi-C
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
68
DNA accessibility
45
DNA binding
15
Transcription
7
DNA methylation
6
3D chromatin structure
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
27
February, 2023
26
August, 2017
23
October, 2019
7
July, 2019
7
May, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
94
bed narrowPeak
75
bigWig
65
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
16
tagAlign
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
145
Homo sapiens
Biosample type
128
tissue
17
primary cell
Organ
535
liver
529
pancreas
368
epithelium
323
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
145
AMP
Genome assembly (visualization)
102
hg19
54
GRCh38
Lab
145
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
tsv
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
145 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
islet of Langerhans
2
2
14
4
muscle of leg
7
13
1
retina
3
15
muscle of arm
17
+ See 6 more…
primary cell
skeletal muscle satellite cell
8
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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