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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
38
DNase-seq
30
ATAC-seq
14
total RNA-seq
6
Hi-C
6
RRBS
4
pCHi-C
3
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
69
DNA accessibility
64
DNA binding
15
Transcription
9
DNA methylation
6
3D chromatin structure
Target of assay
42
histone
42
histone modification
24
broad histone mark
18
narrow histone mark
15
control
7
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
50
June, 2019
27
February, 2023
26
August, 2017
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
July, 2019
7
May, 2019
2
March, 2020
2
May, 2022
1
January, 2018
1
October, 2017
Available data
107
bed narrowPeak
90
bigWig
88
bam
66
bigBed narrowPeak
51
bed broadPeak
39
bed bed3+
38
bigBed broadPeak
26
fastq
15
tagAlign
tsv
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
167
Homo sapiens
Biosample type
150
tissue
17
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
167
AMP
Genome assembly (visualization)
115
hg19
69
GRCh38
Lab
167
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
tsv
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
spleen
20
1
1
2
islet of Langerhans
2
1
14
4
muscle of leg
7
13
1
retina
3
15
+ See 6 more…
primary cell
skeletal muscle satellite cell
8
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
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