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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
25
ChIP-seq
14
total RNA-seq
5
DNase-seq
4
pCHi-C
2
WGBS
1
RRBS
Assay category
34
DNA accessibility
25
DNA binding
14
Transcription
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
27
February, 2023
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
1
July, 2019
1
October, 2017
Available data
47
bed narrowPeak
31
bam
24
fastq
22
bigWig
19
bigBed narrowPeak
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
80
Homo sapiens
Biosample type
75
tissue
5
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
225
heart
206
connective tissue
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
skin of body
1
thymus
Project
80
AMP
Genome assembly (visualization)
48
hg19
22
GRCh38
Lab
80
AMP-T2D consortium
files.file_type!
tsv
organ_slims!
skin of body
BIOSAMPLE
ASSAY
80 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
WGBS
RRBS
tissue
spleen
1
20
1
2
islet of Langerhans
1
2
14
4
retina
15
3
pigmented layer of retina
12
primary cell
retinal pigment epithelial cell
3
1
1
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