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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81DNase-seq
  • 75ATAC-seq
  • 59single cell RNA-seq
  • 52ChIP-seq
  • 49total RNA-seq
  • 6snATAC-seq
  • 4RRBS
  • 2STARR-seq
  • 1FAIRE-seq
  • 1Hi-C
Assay category
  • 163DNA accessibility
  • 108Transcription
  • 52DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 130August, 2021
  • 81June, 2019
  • 47September, 2023
  • 24October, 2019
  • 23April, 2019
  • 14May, 2023
  • 5July, 2019
  • 5May, 2019
  • 1December, 2019
Available data
  • 183bed narrowPeak
  • 144bam
  • 131bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 330Homo sapiens
Biosample type
  • 287tissue
  • 30primary cell
  • 13cell line
Organ
  • 617liver
  • 529pancreas
  • 368epithelium
  • 330kidney
  • 260brain
  • 225heart
  • 206connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 101bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 283AMP
  • 47KPMP
Genome assembly (visualization)
  • 193GRCh38
  • 117hg19
Lab
  • 142Katalin Susztak, Upenn
  • 139AMP-T2D consortium
  • 47KPMP
  • 2Bing Ren, UCSD
Audit category:
  • 18inconsistent ontology term
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

330 results

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Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
RRBS
STARR-seq
FAIRE-seq
Hi-C
tissue
kidney13755927496111
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule1101
kidney epithelial cell151
kidney tubule cell3
glomerular visceral epithelial cell2
kidney glomerular epithelial cell2
cell line
RCC 7860 HIF1a re-expression4
RCC 7860 HIF2a over-expression3
RCC 7860 vector3
HEK293T2
glomerular visceral epithelial cell1
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