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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
456
ChIP-seq
24
ATAC-seq
20
total RNA-seq
7
DNase-seq
7
WGBS
4
Hi-C
2
RRBS
2
STARR-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
456
DNA binding
31
DNA accessibility
21
Transcription
9
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
344
transcription factor
control
109
histone modification
108
histone
82
recombinant protein
62
narrow histone mark
58
RNA binding protein
46
broad histone mark
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
259
November, 2017
59
November, 2018
50
December, 2017
43
August, 2017
40
May, 2022
27
May, 2020
21
August, 2021
6
January, 2019
6
October, 2019
4
December, 2018
3
February, 2021
3
July, 2019
2
June, 2019
1
March, 2020
1
October, 2017
Available data
625
bigWig
596
bam
455
bed narrowPeak
404
fastq
371
bigBed narrowPeak
tsv
64
bed broadPeak
64
bigBed broadPeak
58
tagAlign
13
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
525
Homo sapiens
Biosample type
326
cell line
177
tissue
14
in vitro differentiated cells
8
primary cell
Organ
509
liver
476
pancreas
338
epithelium
318
kidney
232
brain
205
heart
171
connective tissue
146
vasculature
141
blood vessel
101
bone element
98
limb
81
musculature of body
74
artery
66
adipose tissue
63
blood
63
bodily fluid
55
eye
27
nerve
20
vein
19
lung
18
ureter
16
embryo
16
skeleton
16
spleen
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
525
AMP
Genome assembly (visualization)
463
hg19
384
GRCh38
Lab
467
AMP-T2D consortium
40
Karen Mohlke, UNC
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tsv
organ_slims!
mammary gland
target.investigated_as!
control
BIOSAMPLE
ASSAY
525 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
318
1
1
2
2
1
1
tissue
liver
102
20
20
2
3
1
1
1
spleen
12
1
1
2
right lobe of liver
7
1
2
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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