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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 552ChIP-seq
  • 23ATAC-seq
  • 20total RNA-seq
  • 6DNase-seq
  • 5WGBS
  • 4Hi-C
  • 2RRBS
  • 2STARR-seq
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 552DNA binding
  • 29DNA accessibility
  • 21Transcription
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 338transcription factor
  • 108control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 58RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 63December, 2017
  • 54August, 2017
  • 53November, 2018
  • 50May, 2020
  • 40May, 2022
  • 26August, 2021
  • 6October, 2019
  • 3February, 2021
  • 3July, 2019
  • 2June, 2019
  • 1December, 2018
  • 1March, 2020
Available data
  • 681bam
  • 622bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 617Homo sapiens
Biosample type
  • 386cell line
  • 207tissue
  • 15in vitro differentiated cells
  • 9primary cell
Organ
  • 617liver
  • 529pancreas
  • 368epithelium
  • 330kidney
  • 260brain
  • 225heart
  • 206connective tissue
  • 168vasculature
  • 162blood vessel
  • 115limb
  • 101bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 69blood
  • 69bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 19lung
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1bone marrow
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1thymus
Project
  • 617AMP
Genome assembly (visualization)
  • 463hg19
  • 369GRCh38
Lab
  • 555AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 22Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

617 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2378112211
tissue
liver145202023111
right lobe of liver10121
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte411
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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